ABG — Whole-Cell Modeling & CAZyme FEL
Citizen science collaborator producing computational work through initioChem — whole-cell modeling and CAZyme free energy landscape exploration.
Status: Producing — computational work underway, artifacts being generated Domain: Whole-cell modeling, CAZyme free energy landscapes Products: initioChem Springs Fed: hotSpring Funding: Citizen science (volunteer)
The Collaboration
A citizen scientist contributing to computational chemistry through the ecoPrimal ecosystem. Work focuses on whole-cell modeling and CAZyme (Carbohydrate-Active Enzymes) free energy landscape exploration using initioChem’s FEL pipeline.
Live composition: JupyterHub at lab.primals.eco
Product Consumption
| Product | Role | Validation Foundation |
|---|---|---|
| initioChem | FEL exploration for CAZyme targets | hotSpring Exp 220 (190/190 checks) |
| JupyterHub | Interactive computational environment | Live at lab.primals.eco |
The gen5 Pattern
The first collaborator to reach “producing” status — actively generating computational artifacts through the sovereign ecosystem. Demonstrates that the infrastructure supports real-time science production, not just archived reproductions.
Citizen science through sovereign computation: the collaborator consumes compositions, never sees primals, and produces work through the same validated pipelines that the ecosystem uses internally.